Announcement of phyclust

Instead of the irregular maintenance for the vignette, phyclust-guide.pdf, we may only update more examples and the newest documents on our website. Please check Phylogenetic Clustering at http://thirteen-01.stat.iastate.edu/snoweye/phyclust/ . Some documents for main functions in the ./Documents/ subdirectory are provided for references and information for outsourced programs ms, seq-gen, baseml of PAML, and Hap-Clustering. Here are the descriptions for each file.
Readme File Description
00_Readme-phyclust-c.txt A text file for the library phylust-c, a kernel of this package, and basically it is in the format of DESCRIPTION file in R and records the version. Only the stable version of C library would be used to build the package.
00_Readme-ms.txt A text file for ms indicates the version and documentations.
00_Readme-seq-gen.txt A text file for seq-gen indicates the version and documentations.
00_Readme-paml_baseml.txt A text file for paml.baseml indicates the version and documentations.
License Description
ms-Readme.txt A text file, the original readme file in ms.
seq-gen-Readme.txt A text file, the original readme file in seq-gen.
paml_baseml-Readme.txt A text file, the original readme file in PAML.
tzeng-Readme.txt A text file, the original readme file in Hap-Clustering.
Document Description
phyclust-guide.pdf A user guide (vignette) for phyclust. Click here to read.
phyclust-help.pdf A help pages (manual) for phyclust. Click here to read.
msdoc.pdf An online PDF file, the original document for ms. Click here to read.
Seq-Gen.v.1.3.2/ A online directory contains the original document for seq-gen, and it is in HTML format. Click here to read.
pamlDOC.pdf An online PDF file, the original document for PAML. Click here to read.

Maintain: Wei-Chen Chen
E-Mail: phyclust@gmail.com
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