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#### Quick Examples
Some tool functions of <code>phyclust</code> are
demonstrated in the following, and
click titles to show some of <code>phyclust</code> features.
More examples and details can be found in the <code>phyclust</code>
<a href="./document/phyclust-guide.pdf">vignette</a>.
1. <a href="./example/ex_demo.html">Demo</a>
-- An example for quick start.
2. <a href="./example/ex_io.html">File I/O</a>
-- Input and output sequence data.
3. <a href="./example/ex_trees.html">Trees</a>
-- Simulation studies and tree topologies by <code>ms()</code>.
4. <a href="./example/ex_msseqgen.html">ms+seqgen</a>
-- Simulation sequences according a tree.
5. <a href="./example/ex_msseqgenphyclust.html">ms+seqgen+phyclust</a>
-- Bootstrap to assess the number of clusters.
6. <a href="./example/ex_emc.html">.EMC</a>
-- Examples of <code>.EMControl()</code>.
7. <a href="./example/ex_phyclustpamlbaseml.html">phyclust+paml.baseml</a>
-- Combinations of phyloclustering and maximum likelihood tree.
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