Quick Examples
Some tool functions of phyclust
are
demonstrated in the following, and
click titles to show some of phyclust
features.
More examples and details can be found in the phyclust
vignette.
Demo -- An example for quick start.
File I/O -- Input and output sequence data.
Trees -- Simulation studies and tree topologies by
ms()
.ms+seqgen -- Simulation sequences according a tree.
ms+seqgen+phyclust -- Bootstrap to assess the number of clusters.
.EMC -- Examples of
.EMControl()
.phyclust+paml.baseml -- Combinations of phyloclustering and maximum likelihood tree.