R Package

The stable version of phyclust is available on CRAN or mirror sites from R-project, or in the following:


Installation


C Library

The core of phyclust is implemented in C and in a modular way, including flexible data structures and function pointers which allow easy extension to other data types, evolutionary models and optimization algorithms. The C core accesses R functions, for optimizations and random number generation, using the R API, but it can also be compiled as a standalone library for linking to other applications. The testing codes for some main functions are also provided, and it is possible to develop command line interface or standalone software based on phyclust-c without using R.


PHP Web Interface

There is a accessible version web interface which is an example for using phyclust and can be extended to a web service. An executable R and the phyclust R package are required for this interface, and the interface is only tested on the Linux environment.