| code2nid {phyclust} | R Documentation |
Transfer nucleotide codes (A, G, C, T, -) and nucleotide ids (0, 1, 2, 3, 4).
### S3 methods for a list, vector or matrix (default). code2nid(codeseq) nid2code(nidseq, lower.case = TRUE)
codeseq |
a character vector contains nucleotide codes, A, G, C, T, or -. |
nidseq |
a numerical vector contains nucleotide ids, 0, 1, 2, 3, or 4. |
lower.case |
transfer in lower cases. |
These functions are based on the internal object .nucleotide to
transfer codes and nids.
code2nid returns a numerical vector containing nucleotide ids, and
nid2code returns a character vector containing nucleotide codes.
Wei-Chen Chen wccsnow@gmail.com
Phylogenetic Clustering Website: http://snoweye.github.io/phyclust/
.nucleotide,
snp2sid,
sid2snp,
code2snp,
snp2code.
## Not run:
library(phyclust, quiet = TRUE)
a <- c("A", "C", "G", "-", "T")
code2nid(a)
nid2code(code2nid(a))
## End(Not run)